Phenotypic trait predictions

Trait prediction parameters

RefSeq genome: Pantoea septica

Legend:  + = trait present  - = trait absent

Model name Prediction result Prediction confidence Balanced accuracy Model description
alkb n.d. 0.52 0.83 Organism is capable of degrading alkanes (M)
AOB - 0.97 0.96 Organism is part of the clade of ammonia-oxidizing bacteria (E)
ARCHAEA - 1.00 1.00 Organism is an archaeon (C)
ars n.d. 0.63 0.70 Organism is capable of arsenic detoxification (M)
AUTO n.d. 0.98 0.80 Organism is capable of growth with CO2 as sole carbon source (C)
avre n.d. 0.63 0.89 Organism is a plant pathogen (based on AvrE virulence factor) (M)
baicd n.d. 0.78 0.54 Organism is capable of producing secondary bile acids (M)
bena n.d. 0.87 0.79 Organism is capable of degrading benzoate via hydroxylation (M)
bpp n.d. 0.62 0.52 Organism is capable of hydrolyzing phytate (M)
bsh n.d. 0.70 0.83 Organism is capable of deconjugating glycine and taurine from bile salts (M)
buk2 + 0.90 0.87 Organism is capable of producing butyrate (M)
chb + 0.85 0.84 Organism is capable of degrading chitine (M)
cnta n.d. 0.55 0.72 Organism is capable of aromatic ring hydroxylation (M)
coos n.d. 0.70 0.84 Organism is capable of assimilating CO (M)
cutc n.d. 0.71 0.76 Organism is capable of producing trimethylamine via choline (M)
dbfa4 n.d. 0.65 0.72 Organism is capable of performing dibenzofuran degradation (M)
FACULTATIVE n.d. 0.82 0.79 Organism is a facultative anaerobe (C)
HALO n.d. 0.89 0.73 Organism has a halophilic lifestyle (C)
hsdh n.d. 0.52 0.85 Organism is capable of degrading bile acids (M)
hyda + 0.86 0.81 Organism is capable of producing H2 gas (M)
METHANOTROPH - 0.96 0.84 Organism is capable of growth with methane as the sole carbon source (C)
naph2 n.d. 0.74 0.59 Organism is capable of degrading naphtalene (M)
nif - 0.98 0.91 Organism is capable of fixing N2 (E)
NOB - 0.87 0.90 Organism is part of the clade of nitrite-oxidizing bacteria (E)
p450 n.d. 0.76 0.74 Organism is capable of degrading fatty acids (M)
PEN_180 - 0.95 0.96 Organism is resistant to penicillin (trained on S. aureus) (E)
phnx n.d. 0.69 0.85 Organism is capable of hydrolyzing phosphonate (M)
phod n.d. 0.78 0.81 Organism is capable of recycling organic phosphorus (M)
PHOTO - 0.96 0.92 Organism is capable of photon capture for energy acquisition (C)
psa n.d. 0.71 0.65 Organism is capable of synthesizing capsular polysaccharide (M)
PSYCHRO n.d. 0.99 0.68 Organism has a psychrophilic lifestyle (C)
soxb n.d. 0.66 0.78 Organism is capable of oxidizing thiosulfate (M)
SYMBIONT - 0.95 1.00 Organism has an obligate intracellular lifestyle (C)
T3SS n.d. 0.57 0.83 Organism expresses a Type III secretion system (C)
T4SS - 0.92 0.88 Organism expresses a Type IV secretion system (C)
T6SS n.d. 0.94 0.79 Organism expresses a Type VI secretion system (C)
THERM n.d. 1.00 0.78 Organism has a thermophilic lifestyle (C)
THERM_OR_TOLERANT n.d. 1.00 0.78 Organism has a thermophilic lifestyle or is thermotolerant (C)
txta n.d. 0.63 0.54 Organism is a plant pathogen (based on thaxtomin synthesis capability) (M)
urea n.d. 0.69 0.87 Organism is capable of degrading urea (M)
xen + 0.81 0.87 Organism is capable of reducing various alpha-beta-unsaturated and nitro compounds (M)
Aerobe + 1.00 0.96 Organism is capable of aerobic respiration (T)
Anaerobe + 0.86 0.93 Organism is capable of anaerobic respiration (T)
gram_stain - 0.99 0.98 Cells of organism stain Gram-positive (+) or Gram-negative (-) (T)
motility + 0.98 0.95 Organism is capable of self-propelled motion (T)
sporulation - 1.00 0.96 Organism is capable of producing endospores for persistence (T)
Sulfate_reducer - 0.99 0.97 Organism is capable of using sulfate as terminal electron acceptor (T)
amikacin_resistant - 1.00 0.84 Organism is resistant to amikacin. (Trained on Acinetobacter baumannii.) (E)
ciprofloxacin_resistant n.d. 0.64 0.92 Organism is resistant to ciprofloxacin. (Trained on Acinetobacter baumannii.) (E)
ac n.d. 0.81 0.77 Organism is producing acetic_acid
actn_R + 0.88 0.88 Organism is producing R_acetoin
Asaccharolytic n.d. 0.98 0.75 Organism has a Asaccharolytic lifestyle
btoh - 0.98 0.97 Organism is producing 1_butanol
but - 0.99 0.95 Organism is producing butyric_acid
etoh - 0.83 0.82 Organism is producing ethanol
Fermentative + 0.94 0.83 Organism has a Fermentative lifestyle
for - 0.85 0.81 Organism is producing formic_acid
glc_D n.d. 0.89 0.78 Organism is producing D_glucose
h2 - 0.85 0.87 Organism is producing hydrogen
indole n.d. 0.79 0.81 Organism is producing indole
isobut - 0.97 0.87 Organism is producing isobutyric_acid
isoval - 0.98 0.91 Organism is producing isovaleric_acid
lac_D - 0.93 0.87 Organism is producing D_lactic_acid
lac_L n.d. 0.69 0.84 Organism is producing L_lactic_acid
nonfermentative n.d. 0.99 0.67 Organism has a nonfermentative lifestyle
ppa - 0.99 0.87 Organism is producing propionic_acid
Saccharolytic - 0.96 0.89 Organism has a Saccharolytic lifestyle
succ - 0.95 0.90 Organism is producing succinic_acid
nanoaerobemicro - 0.99 0.92 Organism has a nanoaerobemicro lifestyle