Training data

Legend:  + = trait present  - = trait absent

Genome accession Scientific name Trait presence
GCF_000214035.1 Methyloversatilis universalis FAM5 -
GCF_000235885.1 Prevotella stercorea DSM 18206 +
GCF_000222025.1 Haemophilus haemolyticus M19501 -
GCF_000318405.1 Brevundimonas diminuta 470-4 -
GCF_000318135.1 Corynebacterium durum F0235 +
GCF_000238795.1 Haemophilus sputorum CCUG 13788 -
GCF_000245315.1 Bacillus vallismortis DV1-F-3 -
GCF_000221985.1 Streptococcus pseudopneumoniae IS7493 -
GCF_000283495.2 Megasphaera elsdenii DSM 20460 +
GCF_000233655.1 Brachybacterium paraconglomeratum LC44 -
GCF_000235705.1 Lactobacillus curvatus CRL 705 -
GCF_000441535.1 Streptococcus lutetiensis 033 -
GCF_000226135.1 Bacteroides faecis MAJ27 +
GCF_000327325.1 Gordonia rubripertincta NBRC 101908 -
GCF_000257785.1 Streptococcus constellatus subsp. constellatus SK53 -
GCF_000285995.1 Actinomyces naeslundii str. Howell 279 -
GCF_000381365.1 Bacteroides salyersiae WAL 10018 = DSM 18765 = JCM 12988 +
GCF_000426425.1 Bifidobacterium thermacidophilum subsp. thermacidophilum DSM 15837 -
GCF_000484655.1 Blautia wexlerae DSM 19850 -
GCF_000701445.1 Brevundimonas bacteroides DSM 4726 -
GCF_000620985.1 Brochothrix thermosphacta DSM 20171 = FSL F6-1036 -
GCF_000379665.1 Butyricimonas synergistica DSM 23225 +
GCF_000519105.1 Butyricimonas virosa DSM 23226 +
GCF_000375525.1 Corynebacterium propinquum DSM 44285 -
GCF_000379745.1 Enterococcus cecorum DSM 20682 = ATCC 43198 -
GCF_000420645.1 Nevskia ramosa DSM 11499 -
GCF_000372405.1 Porphyromonas somerae DSM 23386 +
GCF_000430565.1 Prevotella timonensis 4401737 = DSM 22865 = JCM 15640 -
GCF_000425525.1 Ruminococcus gauvreauii DSM 19829 -
GCF_000425005.1 Solobacterium moorei DSM 22971 -
GCF_000380145.1 Streptococcus thoraltensis DSM 12221 -
GCF_000262005.1 Pseudomonas monteilii QM -
GCF_000286435.2 Morganella morganii subsp. morganii KT -
GCF_000258205.1 Rothia aeria F0474 -
GCF_000239955.1 Weissella confusa LBAE C39-2 -
GCF_000248095.2 Lactobacillus mucosae LM1 -
GCF_000271445.1 Lactobacillus pentosus KCA1 -
GCF_000406945.1 Enterococcus dispar ATCC 51266 -
GCF_000406965.1 Enterococcus avium ATCC 14025 -
GCF_000479335.1 Streptococcus sp. I-G2 -
GCF_000275465.1 Alcaligenes faecalis subsp. faecalis NCIB 8687 +
GCF_000393955.1 Enterococcus asini ATCC 700915 -
GCF_000263775.1 Staphylococcus capitis QN1 -
GCF_000332735.1 Staphylococcus warneri SG1 -
GCF_000293805.1 Paenibacillus alvei DSM 29 -
GCF_000287215.2 Aeromonas media WS -
GCF_000295715.1 Staphylococcus arlettae CVD059 -
GCF_000621245.1 Pseudomonas monteilii NBRC 103158 = DSM 14164 -
GCF_000327305.1 Lactococcus raffinolactis 4877 -
GCF_000368885.1 Acinetobacter radioresistens NIPH 2130 -
GCF_000739855.1 Alcaligenes faecalis subsp. faecalis NBRC 13111 +
GCF_000298875.1 Leuconostoc gelidum JB7 -
GCF_000612145.1 Staphylococcus sciuri subsp. sciuri Z8 -
GCF_000403825.2 Parabacteroides goldsteinii dnLKV18 +
GCF_000467875.1 Prevotella disiens JCM 6334 = ATCC 29426 +
GCF_000347695.1 Bifidobacterium thermophilum RBL67 -
GCF_000469345.1 Eubacterium ramulus ATCC 29099 -
GCF_000338275.1 Staphylococcus xylosus NJ -
GCF_000494875.1 Staphylococcus pasteuri SP1 -
GCF_000381725.1 Fusobacterium russii ATCC 25533 -
GCF_000424025.1 Clostridium paraputrificum AGR2156 +
GCF_000424205.1 Clostridium cadaveris AGR2141 +
GCF_000424305.1 Pseudobutyrivibrio ruminis AD2017 -
GCF_000424105.1 Lachnospira multipara ATCC 19207 -
GCF_000349565.1 Curtobacterium flaccumfaciens UCD-AKU -
GCF_000565285.1 Bacillus firmus DS1 -
GCF_000754645.1 Vibrio fluvialis 560 -
GCF_000390025.1 Gordonia terrae C-6 -
GCF_000409755.1 Clostridium butyricum DSM 10702 -
GCF_000488855.1 Eubacterium brachy ATCC 33089 -
GCF_000497735.1 Bifidobacterium longum E18 -
GCF_000422085.1 Serratia liquefaciens ATCC 27592 -
GCF_000687995.1 Selenomonas ruminantium AC2024 +
GCF_000621725.1 Prevotella brevis ATCC 19188 -
GCF_000687615.1 Bifidobacterium boum DSM 20432 -
GCF_000687635.1 Bifidobacterium ruminantium DSM 6489 -
GCF_000702905.1 Mitsuokella jalaludinii DSM 13811 -
GCF_000702045.1 Succinivibrio dextrinosolvens H5 -
GCF_000513495.2 Staphylococcus cohnii hu-01 -
GCF_000771345.1 Bifidobacterium coryneforme DSM 20216 -
GCF_000612125.1 Brevibacillus agri 5-2 -
GCF_000599565.1 Trueperella pyogenes MS249 -
GCF_000013285.1 Clostridium perfringens ATCC 13124 +
GCF_000008945.1 Bifidobacterium longum DJO10A -
GCF_000012705.1 Streptococcus agalactiae A909 -
GCF_000007525.1 Bifidobacterium longum NCC2705 -
GCF_000009545.1 Streptococcus uberis 0140J -
GCF_000011065.1 Bacteroides thetaiotaomicron VPI-5482 +
GCF_000007585.1 Porphyromonas gingivalis W83 +
GCF_000261025.1 Prevotella intermedia 17 +
GCF_000148585.2 Streptococcus mitis NCTC 12261 -
GCF_000008065.1 Lactobacillus johnsonii NCC 533 -
GCF_000165575.1 Haemophilus influenzae R2846 -
GCF_000025925.1 Prevotella ruminicola 23 +
GCF_000025985.1 Bacteroides fragilis NCTC 9343 +
GCF_000011985.1 Lactobacillus acidophilus NCFM -
GCF_000006865.1 Lactococcus lactis subsp. lactis Il1403 -
GCF_000009865.1 Staphylococcus haemolyticus JCSC1435 -
GCF_000018045.1 Citrobacter koseri ATCC BAA-895 -
GCF_000017665.1 Cronobacter sakazakii ATCC BAA-894 -
GCF_000016965.1 Clostridium beijerinckii NCIMB 8052 +
GCF_000009925.1 Bacteroides fragilis YCH46 +
GCF_000010145.1 Lactobacillus fermentum IFO 3956 -
GCF_000010185.1 Finegoldia magna ATCC 29328 -
GCF_000253315.1 Streptococcus salivarius JIM8777 -
GCF_000020225.1 Akkermansia muciniphila ATCC BAA-835 +
GCF_000168015.1 Yersinia frederiksenii ATCC 33641 -
GCF_000177335.1 Pyramidobacter piscolens W5455 +
GCF_000010425.1 Bifidobacterium adolescentis ATCC 15703 -
GCF_000013485.1 Streptococcus pyogenes MGAS9429 -
GCF_000008865.2 Escherichia coli O157:H7 str. Sakai -
GCF_000014205.1 Streptococcus sanguinis SK36 -
GCF_000155395.1 Bifidobacterium bifidum NCIMB 41171 -
GCF_000018665.1 Delftia acidovorans SPH-1 -
GCF_000747315.1 Corynebacterium ureicelerivorans -
GCF_000021305.1 Bacillus cereus G9842 -
GCF_000154065.1 Dorea longicatena DSM 13814 -
GCF_000153885.1 Eubacterium ventriosum ATCC 27560 -
GCF_000157955.1 Subdoligranulum variabile DSM 15176 -
GCF_000154425.1 Coprococcus eutactus ATCC 27759 +
GCF_000154125.1 Bacteroides ovatus ATCC 8483 +
GCF_000154105.1 Parabacteroides merdae ATCC 43184 +
GCF_000154205.1 Bacteroides uniformis ATCC 8492 +
GCF_000154385.1 Faecalibacterium prausnitzii M21/2 -
GCF_000154245.1 Clostridium sp. L2-50 -
GCF_000169015.1 Bacteroides caccae ATCC 43185 +
GCF_000063585.1 Clostridium botulinum A str. ATCC 3502 +
GCF_000269925.1 Lactococcus garvieae ATCC 49156 -
GCF_000012825.1 Bacteroides vulgatus ATCC 8482 +
GCF_000012845.1 Parabacteroides distasonis ATCC 8503 +
GCF_000183685.1 Staphylococcus hominis subsp. hominis C80 -
GCF_000017405.1 Ochrobactrum anthropi ATCC 49188 -
GCF_000155915.2 Lactobacillus jensenii 1153 -
GCF_000017025.1 Clostridium botulinum A str. ATCC 19397 +
GCF_000017045.1 Clostridium botulinum A str. Hall +
GCF_000154465.1 Alistipes putredinis DSM 17216 +
GCF_000154525.1 Bacteroides stercoris ATCC 43183 +
GCF_000163735.1 Veillonella sp. 6_1_27 +
GCF_000013465.1 Staphylococcus aureus subsp. aureus USA300_FPR3757 -
GCF_000173795.1 Catenibacterium mitsuokai DSM 15897 -
GCF_000218365.1 Bacteroides sp. 1_1_30 +
GCF_000162555.1 Bacteroides sp. 3_1_23 +
GCF_000162195.1 Bacteroides sp. 3_1_33FAA +
GCF_000159855.2 Bacteroides sp. 3_2_5 +
GCF_000185585.1 Bacteroides sp. 4_1_36 +
GCF_000158515.2 Bacteroides sp. 4_3_47FAA +
GCF_000157075.2 Bacteroides sp. 9_1_42FAA +
GCF_000158375.2 Clostridium sp. 7_2_43FAA -
GCF_000145315.2 Desulfovibrio sp. 3_1_syn3 -
GCF_000159895.2 Escherichia sp. 1_1_43 -
GCF_000158415.2 Escherichia sp. 4_1_40B -
GCF_000158275.2 Fusobacterium nucleatum subsp. animalis 7_1 +
GCF_000159975.2 Ruminococcus sp. 5_1_39BFAA -
GCF_000163715.1 Veillonella sp. 3_1_44 +
GCF_000157015.1 Bacteroides fragilis 3_1_12 +
GCF_000162515.1 Bacteroides sp. 1_1_14 +
GCF_000162155.1 Bacteroides sp. 2_1_22 +
GCF_000162175.1 Bacteroides sp. 2_1_33B +
GCF_000157055.1 Bacteroides sp. 2_2_4 +
GCF_000163655.1 Bacteroides sp. 3_1_19 +
GCF_000186105.1 Bacteroides sp. 3_1_40A +
GCF_000158215.3 Fusobacterium periodonticum 2_1_31 +
GCF_000163915.2 Fusobacterium nucleatum subsp. vincentii 3_1_27 +
GCF_000162355.2 Fusobacterium nucleatum subsp. animalis 3_1_33 +
GCF_000162235.2 Fusobacterium nucleatum subsp. vincentii 3_1_36A2 +
GCF_000158235.1 Fusobacterium gonidiaformans 3-1-5R +
GCF_000158255.2 Fusobacterium nucleatum subsp. vincentii 4_1_13 +
GCF_000158835.2 Fusobacterium gonidiaformans ATCC 25563 +
GCF_000158195.2 Fusobacterium mortiferum ATCC 9817 +
GCF_000158315.2 Fusobacterium ulcerans ATCC 49185 +
GCF_000159915.2 Fusobacterium varium ATCC 27725 +
GCF_000163935.1 Fusobacterium periodonticum 1_1_41FAA +
GCF_000155875.1 Coprococcus comes ATCC 27758 +
GCF_000155085.1 Clostridium sporogenes ATCC 15579 +
GCF_000154865.1 Providencia stuartii ATCC 25827 -
GCF_000155205.1 Ruminococcus lactaris ATCC 29176 -
GCF_000172135.1 Bifidobacterium dentium ATCC 27678 -
GCF_000021245.2 Acinetobacter baumannii AB0057 -
GCF_000156195.1 Bacteroides finegoldii DSM 17565 +
GCF_000155815.1 Bacteroides eggerthii DSM 20697 +
GCF_000156075.1 Bacteroides dorei DSM 17855 +
GCF_000265095.1 Bifidobacterium bifidum BGN4 -
GCF_000159255.1 Enterococcus faecalis TX0104 -
GCF_000156395.1 Providencia rustigianii DSM 4541 -
GCF_000163955.1 Edwardsiella tarda ATCC 23685 -
GCF_000155995.1 Enterobacter cancerogenus ATCC 35316 -
GCF_000005845.2 Escherichia coli str. K-12 substr. MG1655 -
GCF_000156015.1 Butyrivibrio crossotus DSM 2876 -
GCF_000019825.1 Streptococcus pneumoniae G54 -
GCF_000158055.1 Providencia rettgeri DSM 1131 -
GCF_000156175.1 Collinsella intestinalis DSM 13280 -
GCF_000024225.1 Atopobium parvulum DSM 20469 -
GCF_000023905.1 Leptotrichia buccalis C-1013-b -
GCF_000159035.1 Actinomyces urogenitalis DSM 15434 -
GCF_000159275.1 Enterococcus faecalis TX1322 -
GCF_000159715.1 Lactobacillus acidophilus ATCC 4796 -
GCF_000160835.1 Lactobacillus antri DSM 16041 -
GCF_000159175.1 Lactobacillus brevis subsp. gravesensis ATCC 27305 -
GCF_000159195.1 Lactobacillus buchneri ATCC 11577 -
GCF_000159215.1 Lactobacillus fermentum ATCC 14931 -
GCF_000160875.1 Lactobacillus iners DSM 13335 -
GCF_000160175.1 Lactobacillus rhamnosus LMS2-1 -
GCF_000159415.1 Lactobacillus ultunensis DSM 16047 -
GCF_000187265.1 Streptococcus equinus ATCC 9812 -
GCF_000024105.1 Anaerococcus prevotii DSM 20548 +
GCF_000161515.1 Bacillus thuringiensis serovar thuringiensis str. T01001 -
GCF_000175335.1 Clostridium botulinum E1 str. 'BoNT E Beluga' -
GCF_000156495.1 Parabacteroides johnsonii DSM 18315 +
GCF_000158035.1 Bacteroides cellulosilyticus DSM 14838 +
GCF_000155515.2 Lactobacillus paracasei subsp. paracasei 8700:2 -
GCF_000173915.1 Gemella haemolysans ATCC 10379 -
GCF_000160015.1 Veillonella dispar ATCC 17748 +
GCF_000022905.1 Corynebacterium aurimucosum ATCC 700975 -
GCF_000163515.2 Erysipelotrichaceae bacterium 5_2_54FAA -
GCF_000177015.3 Ruminococcaceae bacterium D16 -
GCF_000144405.1 Prevotella melaninogenica ATCC 25845 -
GCF_000174815.1 Porphyromonas endodontalis ATCC 35406 +
GCF_000174015.1 Atopobium rimae ATCC 49626 -
GCF_000173655.1 Corynebacterium amycolatum SK46 +
GCF_000157095.2 Bacteroides sp. D1 +
GCF_000159075.2 Bacteroides sp. D2 +
GCF_000158295.2 Fusobacterium necrophorum D12 +
GCF_000158535.2 Fusobacterium nucleatum subsp. animalis D11 +
GCF_000158475.2 Oxalobacter formigenes HOxBLS -
GCF_000158555.2 Coprobacillus sp. D7 -
GCF_000173355.1 Anaerococcus hydrogenalis DSM 7454 +
GCF_000185645.1 Gemella morbillorum M424 -
GCF_000204335.2 Gemella sanguinis M325 -
GCF_000162275.1 Parabacteroides sp. D13 +
GCF_000163095.1 Pediococcus acidilactici 7_4 -
GCF_000157255.1 Enterococcus gallinarum EG2 -
GCF_000412335.2 Cedecea davisae DSM 4568 -
GCF_000230275.1 Acidaminococcus intestini RyC-MR95 -
GCF_000161935.1 Lactobacillus coleohominis 101-4-CHN -
GCF_000162255.1 Lactobacillus crispatus 125-2-CHN -
GCF_000026225.1 Escherichia fergusonii ATCC 35469 -
GCF_000225345.1 Roseburia hominis A2-183 -
GCF_000160575.1 Weissella paramesenteroides ATCC 33313 -
GCF_000162215.1 Bacteroides sp. D20 +
GCF_000163675.1 Bacteroides sp. D22 +
GCF_000160595.1 Leuconostoc mesenteroides subsp. cremoris ATCC 19254 -
GCF_000306805.1 Streptococcus intermedius JTH08 -
GCF_000160055.1 Dialister invisus DSM 15470 +
GCF_000174775.1 Porphyromonas uenonis 60-3 +
GCF_000174195.1 Roseburia inulinivorans DSM 16841 +
GCF_000162475.2 Granulicatella elegans ATCC 700633 -
GCF_000159995.1 Alloprevotella tannerae ATCC 51259 -
GCF_000188175.1 Phascolarctobacterium succinatutens YIT 12067 +
GCF_000182605.1 Clostridium butyricum E4 str. BoNT E BL5262 -
GCF_000024185.1 Methanobrevibacter ruminantium M1 -
GCF_000182645.1 Ochrobactrum intermedium LMG 3301 -
GCF_000411115.1 Capnocytophaga granulosa ATCC 51502 -
GCF_000023085.1 Lactobacillus plantarum JDM1 -
GCF_000466385.1 Aneurinibacillus aneurinilyticus ATCC 12856 -
GCF_000332875.2 Anaerostipes hadrus DSM 3319 -
GCF_900291485.1 Ruminococcus bromii L2-63 -
GCF_000188315.1 Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957 -
GCF_000185605.1 Bacteroides eggerthii 1_2_48FAA +
GCF_000176515.1 Grimontia hollisae CIP 101886 -
GCF_000177055.1 Prevotella timonensis CRIS 5C-B1 -
GCF_000265365.1 Alistipes finegoldii DSM 17242 -
GCF_000025085.1 Staphylococcus lugdunensis HKU09-01 -
GCF_000178275.1 Bacteroides ovatus SD CMC 3f +
GCF_000178215.1 Bacteroides xylanisolvens SD CC 1b +
GCF_000186945.2 Solobacterium moorei F0204 -
GCF_000231275.1 Alistipes indistinctus YIT 12060 -
GCF_000296465.1 Barnesiella intestinihominis YIT 11860 -
GCF_000315485.1 Bacteroides oleiciplenus YIT 12058 +
GCF_000225705.1 Collinsella tanakaei YIT 12063 -
GCF_000242435.1 Dialister succinatiphilus YIT 11850 +
GCF_000213555.1 Dysgonomonas gadei ATCC BAA-286 -
GCF_000245775.1 Megamonas funiformis YIT 11815 +
GCF_000243215.1 Odoribacter laneus YIT 12061 -
GCF_000186545.1 Streptococcus anginosus 1_2_62CV -
GCF_000230915.1 Paenibacillus lactis 154 -
GCF_000166035.1 Faecalibacterium cf. prausnitzii KLE1255 -
GCF_000148065.1 Enterococcus faecalis TX2134 -
GCF_000179055.1 Prevotella bryantii B14 -
GCF_000091725.1 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 +
GCF_000092345.1 Clostridium botulinum F str. 230613 -
GCF_000164695.2 Rothia dentocariosa ATCC 17931 -
GCF_000233955.1 Paraprevotella clara YIT 11840 -
GCF_000195615.1 Bacteroides clarus YIT 12056 +
GCF_000195635.1 Bacteroides fluxus YIT 12057 +
GCF_000193395.1 Prevotella denticola F0289 -
GCF_000146325.1 Pediococcus acidilactici DSM 20284 -
GCF_000210835.1 Bacteroides fragilis 638R +
GCF_000210895.1 Haemophilus parainfluenzae T3T1 -
GCF_000179675.1 Prevotella disiens FB035-09AN +
GCF_000179735.1 Veillonella atypica ACS-049-V-Sch6 +
GCF_000180155.1 Actinomyces oris K20 -
GCF_000212375.1 Porphyromonas asaccharolytica DSM 20707 +
GCF_000314755.2 Staphylococcus simulans ACS-120-V-Sch1 -
GCF_000185505.1 Pseudoramibacter alactolyticus ATCC 23263 -
GCF_000191365.1 Enterococcus casseliflavus ATCC 12755 -
GCF_000185845.1 Prevotella salivae DSM 15606 +
GCF_000187855.1 Streptococcus cristatus ATCC 51100 -
GCF_000180075.1 Streptococcus vestibularis F0396 -
GCF_000364445.1 Methylobacterium mesophilicum SR1.6/6 -
GCF_000183565.1 Peptoniphilus harei ACS-146-V-Sch2b -
GCF_000204985.1 Lactobacillus johnsonii DPC 6026 -
GCF_000526595.1 Cellulosimicrobium cellulans J36 -
GCF_000213825.1 Streptococcus parauberis KCTC 11537 -
GCF_000221505.1 Lactobacillus oris F0423 -
GCF_000215645.1 Corynebacterium ulcerans 809 +
GCF_000270145.1 Streptococcus gallolyticus subsp. gallolyticus ATCC 43143 -
GCF_000195105.1 Pseudomonas stutzeri DSM 4166 -
GCF_000227315.1 Peptoniphilus indolicus ATCC 29427 -
GCF_000340375.1 Eggerthia catenaformis OT 569 = DSM 20559 -